Last week the bottom was painted with two coats of Sea Hawk Tropikote (red, then blue). Because she was up on jack stands and blocked in two places at the bottom of the keel there were two small areas on the very bottom of the keel that could not get painted. As I had done in the past, once she was lifted up onto straps and the wood blocks were removed, I started to sand off a little of the old paint and prep to apply a new coat.
To my surprise I noticed two (2) small holes in the very bottom of the keel just before the keel curves upward towards the hull. They had been concealed/hidden by the wood blocks. The first hole is about 1/2" in diameter with jagged edges (i.e. not drilled). It is approximately 1/2" in depth. The second hole is just in back of this first hole. The second hole is smaller (1/4" diam) but about the same 1/2" in depth. It is also somewhat jagged. Both "holes" appear to be old but I am not a good judge of this. While looking at them I wondered if somehow they had been "plugged" with some type of hull material and they plugs had just accidentally "popped out" with the expansion/contraction of the hull from this Summer's oppressively heat and humidity.
With marina staff standing around waiting for a "go/no go" I made a "command decision" to launch rather than reset the jack stands and blocks and work on trying to fill/fix the holes.
I have owned S/V Bali Ha'i since July 2011 when I had a complete survey done. She has been out of the water 3 times for bottom painting. I have NEVER noticed these holes before although I admit that I had someone paint the bottom in the past who I trusted. However, I am confident that if he had noticed these holes he certainly would have repaired them. He had repaired and faired a few minor "nicks" on other spots on the hull.
I also clean the bottom myself and try to do so once a month. I have never observed these holes before although, admittedly, the mooring field is pretty murky with very limited viz. However, I work close in to the hull and am meticulous about scraping and brushing the hull. I would like to think I would have noticed these holes although I readily admit it is possible I did not notice them.
As I now sit at my computer with a cold Guinness I am beginning to wonder if, as is my history, I made a mistake in launching today. I am wondering what damage may be caused by water intrusion at these two (2) holes. Part of my concern is that I am not sure what material is at the very bottom of the keel. Will these holes degrade the integrity of the encapsulated keel

It was my plan to haul S/V Bali Ha'i again in January 2015 for some additional maintenance work, etc. I am wondering if it is safe to leave these two (2) holes the way they are until January 2015 or if I should haul out again in 1-2 days, let the keel dry (and apply a heat gun to aid in drying) and then fill these two (2) holes NOW before any damage is done, if any can be done.
Any and all thoughts, suggestions, recommendations, observations, etc. will be greatly appreciated.
Thank you.